Databases

The following databases are used in our research practices:

 
rNMR logo

Open-source software for NMR data analysis.

Role: Principal Developer. Released on 05/31/2009.

 

Madison Metabolomics consortium database (MMCD).

Role: Co-Developer. Released in 2006

 

Platform for predicting virulence of human pathogens.

Role: Project Leader. Released on 04/05/2019.

 
 
 

Software Platforms

The following software tools are used in our research practices:

FUGU-MS

FUGU-MS, an open-source software platform developed in R for statistical filtering, clustering, and visualizing of high-resolution LC-MS data

rNMR

rNMR is an open source software package for visualizing and interpreting one and two dimensional NMR data

MINT

The Metabolomics Integrator (MINT) is a post-processing tool for liquid chromatography-mass spectrometry (LCMS) based metabolomics

 

ProteomicsQC

A quality control (QC) pipeline server for quantitative proteomics, automated processing, and interactive visualisations of QC results. The server allows to setup multiple proteomics pipelines grouped by projects

MINNO

Tool for visualization and refinement of metabolic networks for diverse organisms

SCALiR

An app for computing concentrations using standard curves